PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G135700.1
Common NameB456_004G135700, LOC105791368
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 335aa    MW: 37189.9 Da    PI: 4.7424
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G135700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.8e-19120170155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         ++++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ +l+g
  Gorai.004G135700.1 120 KKFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYDTAEEAAMVYDNAAIQLRG 170
                         59********.**********72....45*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.25E-32120177No hitNo description
Gene3DG3DSA:3.30.730.106.4E-30121178IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-21121178IPR016177DNA-binding domain
PfamPF008472.0E-12121170IPR001471AP2/ERF domain
SMARTSM003801.6E-38121184IPR001471AP2/ERF domain
PROSITE profilePS5103223.578121178IPR001471AP2/ERF domain
PRINTSPR003673.5E-10122133IPR001471AP2/ERF domain
PRINTSPR003673.5E-10144160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048364Biological Processroot development
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MDHCSVSSIK YTEHRNQTKL LSPPLNVKVE NQPEMKPRIV RISVTDADAT DSSSDEDEEQ  60
TTRRVKKFVN EITIGSSSCP AQNDAAFRSK SSTLSRNSRK RPAAVSVAKA SSAKVLPAGK  120
KFRGVRQRPW GKWAAEIRDP LRRVRLWLGT YDTAEEAAMV YDNAAIQLRG PDALTNFTTP  180
QQKSLQDKNS QKPLSSSEYN SVEESHTTTT NICSPTSVLR CPSLSTDEVD SPQSVKESRE  240
IESEPREDSC CISREHVSDF SSNPFSIPSD IFSSVPDLFD DDTSFLKDDF DNGFFSSCED  300
FEFEFGGGFS SWQHVDDHFQ DIGDLFGADS ILAI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-21119177362ATERF1
3gcc_A2e-21119177362ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00027PBMTransfer from AT4G23750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012474867.10.0PREDICTED: ethylene-responsive transcription factor CRF2-like
TrEMBLA0A0D2RYY30.0A0A0D2RYY3_G
STRINGPOPTR_0003s13610.12e-79(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.26e-52cytokinin response factor 2
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]